De fleste av disse bruker RNA-seq-data, noen bruker WGS-data, og noen bruker begge deler. De er oppført alfabetisk. Jeg vil legge til listen når jeg oppdager mer.

1. Barnacle: http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-14-550
2. Bellerophontes: http://bioinformatics.oxfordjournals.org/content/28/16/2114.long
3. BreakDancer: http: //www.nature.com/nmeth/journal/v6/n9/abs/nmeth.1363.html
4. BreakFusion: http: //www.ncbi.nlm.nih .gov / pmc / articles / PMC3389765 /
5. BreakPointer: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3561864/
6. ChimeraScan: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187648/
7. Comrad: http: / /bioinformatics.oxfordjournals.org/content/27/11/1481.long
8. CRAC: http://www.ncbi.nlm.nih.gov/pmc/articles/ PMC4053775 /
9. deFuse: http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1001138
10. Dissekere: http://bioinformatics.oxfordjournals.org/content/28/12/i179.abstract
11. EBARDenovo: http: //bioinformatics.oxfordjournals. org / conten t / early / 2013/03/01 / bioinformatics.btt092
12. EricScript: http://bioinformatics.oxfordjournals.org/content/28/24/3232
13. FusionAnalyser: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3439881/
14. FusionCatcher: http: //biorxiv.org/content/early/2014/11/19/011650.full-text.pdf+html
15. FusionFinder: http: //www.ncbi.nlm .nih.gov / pmc / articles / PMC3384600 /
16. FusionHunter: http://bioinformatics.oxfordjournals.org/content/27/12/1708.long
17. FusionMap: http://bioinformatics.oxfordjournals.org/content/27/14/1922
18. FusionQ: http: // www .biomedcentral.com / 1471-2105 / 14/193
19. FusionSeq: http://www.genomebiology.com/2010/11/10/R104
20. IDP-fusion: http://nar.oxfordjournals.org/content/early/2015/06/03/nar.gkv562.full
21. iFUSE: http://bioinformatics.oxfordjournals.org/content/29/13/1700.long
22. InFusion: https://bitbucket.org / kokonech / infusion / wiki / Home
23. INTEGRATE: http://www.ncbi.nlm.nih.gov/pubmed/26556708
24. JAFFA: http://www.genomemedicine.com/content/7/1/43
25. LifeScope: http://www.thermofisher.com/ nei / no / home / life-science / sequencing / next-generation-sequencing / solid-next-generation-sequencing / solid-next-generation-sequencing-data-analysis-solutions / lifescope-data-analysis-solid-next- generasjon-sekvensering / lifescope-genomisk analyse-programvare-solid-neste-generasjon-sekvensering.html
26. MapSplice: http://www.ncbi.nlm.nih.gov / pubmed / 20802226
27. MOJO https://github.com/cband/MOJO
28. nFuse: http: // www.ncbi.nlm.nih.gov/pmc/articles/PMC3483554/
29. Pegasus: http://www.biomedcentral.com/1752-0509/8/97
30. PRADA: http://www.ncbi.nlm.nih.gov/pubmed/24695405
31. ShortFuse: http: //www.ncbi.n lm.nih.gov/pmc/articles/PMC3072550/
32. SnowShoes-FTD: http://nar.oxfordjournals.org/content/39/15/e100
33. SOAPFuse: http://www.genomebiology.com/2013/14/2/R12
34. SOAPFusion: http: // www.ncbi.nlm.nih.gov/pubmed/24123671
35. STJERNE: http://bioinformatics.oxfordjournals.org/content/29/1/15
36. STAR-Fusion: https://github.com/STAR-Fusion/STAR-Fusion/wiki
37. TopHat-Fusion: http : //www.ncbi.nlm.nih.gov/pmc/articles/PMC3245612/
38. TRUP: http://www.genomebiology.com/2015/16/1 / 7
39. ViralFusionSeq: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3582262/

Andre nyttige programmer:

Chimeraviz (visualiseringsverktøy for genfusjoner): https://www.ncbi.nlm.nih.gov/pubmed/28525538 (ansvarsfraskrivelse: Jeg opprettet dette)

Chimera: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4253834/
OncoFuse: http://bioinformatics.oxfordjournals.org/content/29/20/2539.long
FuMa: http://bioinformatics.oxfordjournals.org/content/early/2015/12/09/bioinformatics.btv721.abstract

1- Chimerascan + Star

2- Tophat Fusion

To rørledninger jeg har brukt mye og anbefaler. De andre som er oppført av @ L42 kan jeg ikke snakke med, men Star Fusion høres lovende ut. Star er rask.